Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866161:139866184:[+] chr21:27253465:27253498:[-] nonBSJ supported 3UTR

circRNA 5': AGAAAAUC-CUU------GUCUUCC---CUUAAA 3'


            |:|||||| ||: :||| |||||


target  3':UUUUUUUAGAGAGAUUUCGUAGACUUUAUGAAUU 5'

 -7.60 27 RIC-seq
chrX:139866170:139866188:[+] chr21:27253472:27253488:[-] nonBSJ supported 3UTR

circRNA 5':UUGUCUUCCCUUAAAUCUA 3'


            | |||: ||||


target  3': AGAGAGAUUUCG-UAGAC 5'

 -4.20 2 RIC-seq
chrX:139866316:139866351:[+] chr21:27423339:27423362:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGU 3'


            |||:| | :|: ||||: |||||


target  3':ACGAGG-----------CGGGGUGGUCUG-UAGGCU 5'

 -21.30 2 RIC-seq
chrX:139866316:139866354:[+] chr21:27423339:27423364:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUC 3'


            |||:| | :|: ||||: ||||| ||


target  3':ACGAGG-----------CGGGGUGGUCUG-UAGGCUCA 5'

 -22.50 14 RIC-seq
chrX:139866652:139866719:[+] chr21:27394206:27394257:[-] nonBSJ supported CDS

circRNA 5':CUGCUCGUC-UUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUG---UCUUCC-AGCA-UCUUCA-UGUCUUCCA 3'


            |||| || ||| |||||||| ||||| || ||:||| : ||||||


target  3':UACGACCACCAAG-----------------------AGAGACACCGAAGAAGCAUCCCAAGGAGUCGGAGAAGGA 5'

 -33.90 22 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866351:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866354:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC