Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865823:139865841:[+] chr21:33039641:33039663:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCC---AGUCAG-UCAG 3'


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target  3':ACCAGAGGACUCUCACUCUAGUG 5'

 -13.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr21:33039641:33039663:[+] target 14767 chr21:33039644-33039645 A>T Abnormal_central_motor_function|Amyotrophic_lateral_sclerosis_1,_autosomal_recessive ClinVar
chr21:33039641:33039663:[+] target 695024 chr21:33039648-33039649 C>T Amyotrophic_lateral_sclerosis|Amyotrophic_lateral_sclerosis_type_1 ClinVar
chr21:33039641:33039663:[+] target 14757 chr21:33039650-33039651 C>G Amyotrophic_lateral_sclerosis_type_1|SOD1-related_disorder|not_provided ClinVar
chr21:33039641:33039663:[+] target 934816 chr21:33039650-33039651 C>T Amyotrophic_lateral_sclerosis_type_1 ClinVar