Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865834:139865846:[+] chr19:15367823:15367838:[-] nonBSJ supported CDS

circRNA 5': UCAGUC--AGUGUCU 3'


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target  3':UAGUCAGCUUGACAGU 5'

 -12.50 14 RIC-seq
chrX:139865984:139866011:[+] chr19:15349937:15349962:[-] nonBSJ supported CDS

circRNA 5':AUC-CAUGUCUUCCAGUAACCUCCC-AGUC 3'


            || ||:|: ||| ||||| ||:


target  3': AGAGUGCG--AGGAGAAA-GAGGGCUCGC 5'

 -17.80 28 RIC-seq
chrX:139866000:139866018:[+] chr19:15349941:15349961:[-] nonBSJ supported CDS

circRNA 5':AAC-CUCC-CAGUCUUCC-AGA 3'


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target  3': UGCGAGGAGAAAGAGGGCUCG 5'

 -15.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:15349937:15349962:[-] target 1708222 chr19:15349942-15349943 C>CGCTCCTCTTTCTCCCGA Intellectual_disability ClinVar
chr19:15349941:15349961:[-] target 1708222 chr19:15349942-15349943 C>CGCTCCTCTTTCTCCCGA Intellectual_disability ClinVar