Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866286:139866326:[+] chr18:46783411:46783452:[-] nonBSJ supported CDS

circRNA 5':CAGAAAAUCCUUGUCUUCCCUCAAAUCCAU---AGCUUCCGAAA 3'


            |||| :||| || || |||| ||:||


target  3':CUCUUGCUUUGACAC--GGCUGUAUAAACGAUUUCGACGGUUUG 5'

 -13.60 31 RIC-seq
chrX:139866287:139866326:[+] chr18:46783411:46783452:[-] nonBSJ supported CDS

circRNA 5': AGAAAAUCCUUGUCUUCCCUCAAAUCCAU---AGCUUCCGAAA 3'


            |||| :||| || || |||| ||:||


target  3':CUCUUGCUUUGACAC--GGCUGUAUAAACGAUUUCGACGGUUUG 5'

 -13.10 29 RIC-seq
chrX:139866295:139866326:[+] chr18:46783420:46783452:[-] nonBSJ supported CDS

circRNA 5':CUUGUCUUCCCUCAAAUCCAU---AGCUUCCGAAA 3'


            |||| || || |||| ||:||


target  3':UGACAC--GGCUGUAUAAACGAUUUCGACGGUUUG 5'

 -11.50 1 RIC-seq
chrX:139866332:139866355:[+] chr18:46783407:46783428:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCCGUGUCU 3'


            || | ||||: |||:|


target  3':ACCUCUCU-UGCUUUGA-CACGGC 5'

 -11.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr18:46783411:46783452:[-] target 3187 chr18:46783435-46783436 T>A Dyggve-Melchior-Clausen_syndrome ClinVar
chr18:46783420:46783452:[-] target 3187 chr18:46783435-46783436 T>A Dyggve-Melchior-Clausen_syndrome ClinVar
chrX:139866286:139866326:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866287:139866326:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866295:139866326:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC