Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866603:139866643:[+] chr17:76115386:76115422:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCUAUAU-----CUCCAGGUCUUCCAGCAUCUCCAGGGCU 3'


            |||| ||:||| ||||||| :||| ||| ||||


target  3':UCAGACGGGUAUUUAGUCGAGGUCC-------UGUA-AGG-CCCGU 5'

 -34.10 1 RIC-seq
chrX:139866603:139866658:[+] chr17:76115386:76115428:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGC-UUCCA-GCAUCUGCUCG 3'


            |||| ||:||| ||| |||||||:| |||| ||| || ||


target  3':UCAGACGGGUAUUUA-GUC------------GAGGUCCUGUAAGGCCCGUU-AC-AGU 5'

 -36.50 48 RIC-seq
chrX:139866608:139866658:[+] chr17:76115391:76115428:[-] nonBSJ supported CDS

circRNA 5':UCCUAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGC-UUCCA-GCAUCUGCUCG 3'


            ||:||| ||| |||||||:| |||| ||| || ||


target  3':CGGGUAUUUA-GUC------------GAGGUCCUGUAAGGCCCGUU-AC-AGU 5'

 -30.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:76115386:76115422:[-] target - chr17:76115421-76115422 C>T PACA-CA ICGC
chr17:76115386:76115428:[-] target - chr17:76115421-76115422 C>T PACA-CA ICGC
chr17:76115391:76115428:[-] target - chr17:76115421-76115422 C>T PACA-CA ICGC