Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865527:139865565:[+] chr18:31318903:31318937:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGCAAAUCCAGUCUUCCAG-CAAUUACUGGUC 3'


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target  3':ACUGAAGGGA----AGA-UAGAAUUGAAGUUAUACUCCGU 5'

 -13.50 15 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr18:31318903:31318937:[+] target 620449 chr18:31318903-31318904 T>A Severe_feeding_difficulties-failure_to_thrive-microcephaly_due_to_ASXL3_deficiency_syndrome|not_provided ClinVar
chr18:31318903:31318937:[+] target 3235810 chr18:31318919-31318920 TAAGA>T Severe_feeding_difficulties-failure_to_thrive-microcephaly_due_to_ASXL3_deficiency_syndrome ClinVar
chr18:31318903:31318937:[+] target - chr18:31318911-31318912 A>G LINC-JP ICGC