Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865767:139865809:[+] chr17:57762992:57763045:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAAAGAAAUCCAGG-UCUUCCAGUC--AAUCAGUGU-------CUUC 3'


            |||||:| : || |||||| |: ||:|| ||: ||||


target  3':CGAGGUUUCGUGAGAGAAAAAAGAAGGACGUUUUUGGUGACGUCCUCAAGAAGU 5'

 -23.50 1 RIC-seq
chrX:139865767:139865810:[+] chr17:57762992:57763045:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAAAGAAAUCCAGG-UCUUCCAGUC--AAUCAGUGU-------CUUCC 3'


            |||||:| : || |||||| |: ||:|| ||: ||||


target  3':CGAGGUUUCGUGAGAGAAAAAAGAAGGACGUUUUUGGUGACGUCCUCAAGAAGU 5'

 -24.30 7 RIC-seq
chrX:139865767:139865810:[+] chr17:57762993:57763045:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAAAGAAAUCCAGG-UCUUCCAGUC--AAUCAGUGU-------CUUCC 3'


            |||||:| : || |||||| |: ||:|| ||: ||||


target  3':CGAGGUUUCGUGAGAGAAAAAAGAAGGACGUUUUUGGUGACGUCCUCAAGAAG 5'

 -24.30 1 RIC-seq
chrX:139865770:139865807:[+] chr17:57763030:57763052:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCU 3'


            |||| ||:|: ||||: || | ||


target  3': GUCU--------GUUCG--AGGUUUC---GUGAGAG 5'

 -12.60 1 RIC-seq
chrX:139865770:139865825:[+] chr17:57763000:57763052:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUC----CAGG 3'


            |||| :| ||||:: || || |||||| |:|||:| ||||


target  3': GUCUG-UUCGAGGUUUC----GUGAGAGAAAAA-AGAAGGACG-UUUUUGGUGACGUCCU 5'

 -25.00 42 RIC-seq
chrX:139865782:139865825:[+] chr17:57763000:57763049:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGU-CAAUCAGUG---UCUUCCAGAAAGAAAUC----CAGG 3'


            ||:|: ||||: || || |||||| |:|||:| ||||


target  3':UGUUCG--AGGUUUCGUGAGAGAAAAAAGAAGGACG-UUUUUGGUGACGUCCU 5'

 -24.20 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:57762992:57763045:[+] target 488420 chr17:57763005-57763006 C>T Inborn_genetic_diseases|Intellectual_disability,_autosomal_dominant_56 ClinVar
chr17:57762992:57763045:[+] target 3066075 chr17:57763023-57763024 GAA>G Intellectual_disability,_autosomal_dominant_56 ClinVar
chr17:57762993:57763045:[+] target 488420 chr17:57763005-57763006 C>T Inborn_genetic_diseases|Intellectual_disability,_autosomal_dominant_56 ClinVar
chr17:57762993:57763045:[+] target 3066075 chr17:57763023-57763024 GAA>G Intellectual_disability,_autosomal_dominant_56 ClinVar
chr17:57763000:57763049:[+] target 488420 chr17:57763005-57763006 C>T Inborn_genetic_diseases|Intellectual_disability,_autosomal_dominant_56 ClinVar
chr17:57763000:57763049:[+] target 3066075 chr17:57763023-57763024 GAA>G Intellectual_disability,_autosomal_dominant_56 ClinVar
chr17:57763000:57763052:[+] target 488420 chr17:57763005-57763006 C>T Inborn_genetic_diseases|Intellectual_disability,_autosomal_dominant_56 ClinVar
chr17:57763000:57763052:[+] target 3066075 chr17:57763023-57763024 GAA>G Intellectual_disability,_autosomal_dominant_56 ClinVar
chr17:57762992:57763045:[+] target - chr17:57763003-57763004 T>C LINC-JP ICGC
chr17:57762993:57763045:[+] target - chr17:57763003-57763004 T>C LINC-JP ICGC
chr17:57763000:57763049:[+] target - chr17:57763003-57763004 T>C LINC-JP ICGC
chr17:57763000:57763052:[+] target - chr17:57763003-57763004 T>C LINC-JP ICGC