Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866405:139866439:[+] chr17:556577:556609:[-] nonBSJ supported 5UTR

circRNA 5':UGUCUUCCAGCCUACUUGUGUCUU-CCAACAAAGGU 3'


            || :||||| || ::|| || ||||


target  3':UCACGAGGUCC--UGUAAGUAGUGUGGGAC-UUCCU 5'

 -15.00 1 RIC-seq
chrX:139866406:139866454:[+] chr17:420704:420733:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCCUACUUGUGUCUUCCAACAAAGGUACGUCUUCCAACAAA 3'


            |||| |||||| ||||| || ||||


target  3':UGGAAUAA-GGAUGA-----------------CAUGCCGACAA-UGUUC 5'

 -14.20 1 RIC-seq
chrX:139866408:139866454:[+] chr17:420697:420733:[-] nonBSJ supported CDS

circRNA 5':CUUCC-AGCCUACUUGUGUCUUCCAACAAAGGUACGUCUUCCAACAAA 3'


            |||| |:||| |||| || ||||| || ||||


target  3':AAAGGUUUGGAAU-------AAGGAUGA---CAUGCCGACAA-UGUUC 5'

 -17.90 33 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:556577:556609:[-] target - chr17:556587-556588 G>A RECA-EU ICGC