Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866642:139866657:[+] chr16:72820153:72820171:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCAGC---AUCUGCUC 3'


            |||| ||||:|:


target  3':AAAGGAAAAUUUAGAUGGU 5'

 -9.30 4 RIC-seq
chrX:139866190:139866217:[+] chr16:72829086:72829117:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCAAAAAAUCC-GGGU-CUUCC-AGG 3'


            |||: |||: || |||


target  3':CCGAGCUGACCCCAUUCCCCGUGACACCUCCC 5'

 -9.50 1 RIC-seq
chrX:139866437:139866465:[+] chr16:72923755:72923787:[-] nonBSJ supported CDS

circRNA 5':GGUACGU-CUUCCAACAAA--GGUAC-GUCUUC 3'


            |:||:| || :|: |:|||


target  3':GCGUGUACGACCUACUCCAACUCGAACCGGAAC 5'

 -9.20 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr16:72820153:72820171:[-] target - chr16:72820169-72820170 C>T LICA-CN ICGC