Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866434:139866450:[+] chr15:84287010:84287028:[+] nonBSJ supported CDS

circRNA 5':AAAGGUACGU---CUUCCAA 3'


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target  3': UUCCGUGCUAGUGAAGGUG 5'

 -17.40 3 RIC-seq
chrX:139866452:139866468:[+] chr15:84287010:84287028:[+] nonBSJ supported CDS

circRNA 5':AAAGGUACGU---CUUCCAA 3'


            ||||:||| ||||||


target  3': UUCCGUGCUAGUGAAGGUG 5'

 -17.40 6 RIC-seq
chrX:139866488:139866516:[+] chr15:84287007:84287028:[+] nonBSJ supported CDS

circRNA 5':AAAGGUACG-UCUUCCAGAAAAUCCACGUC 3'


            ||||:||| || |||||||


target  3': UUCCGUGCUAGUGA-------AGGUGCAU 5'

 -19.60 12 RIC-seq
chrX:139865893:139865918:[+] chr15:84234375:84234395:[+] nonBSJ supported Intron

circRNA 5':UCCACAUCUUCCGGAAAAAAUCCAGG 3'


            ||||||||| |||||


target  3':UGGUGUAGAACAAAG-----AGGUCG 5'

 -17.80 52 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865893:139865918:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC