Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866768:139866789:[+] chr15:89656976:89656996:[+] nonBSJ supported 5UTR

circRNA 5':CGUCUC-CAGUGUGCUGAUCUUC 3'


            |:| ||| || | |||||:


target  3':CCGGCCAGUC-CA-GUCUAGAGA 5'

 -12.00 1 RIC-seq
chrX:139866768:139866800:[+] chr15:89656968:89656996:[+] nonBSJ supported 5UTR

circRNA 5':CGUCUC-CAGUGUGCUGAUCUUCUGACAUUCAGG 3'


            |:| ||| || | |||| ||| |||||:


target  3':CCGGCCAGUC-CA-GUCUAG-AGAA--UAAGUUU 5'

 -15.10 2 RIC-seq
chrX:139866773:139866805:[+] chr15:89656976:89657003:[+] nonBSJ supported 5UTR

circRNA 5':CCAGUGU-GCUGAUCUUCUGACAUUCAGGUCUUC 3'


            |||| ||:| || ||||:|||:


target  3':UGUCAACCCGGCCAGUCC------AGUCUAGAGA 5'

 -18.90 34 RIC-seq
chrX:139865356:139865388:[+] chr15:89659697:89659718:[+] nonBSJ supported CDS

circRNA 5':UGUGUCAAGGUCUUCCAACAACUCCGGGUCUUC 3'


            |:|| :|:| |||:|||:|


target  3':UCGCACUCUCGG-----------GGCUCAGGAC 5'

 -17.60 1 RIC-seq
chrX:139865363:139865405:[+] chr15:89659699:89659748:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAACAACUCCGGGUCUUCCAGC-----------GA-CUUCAAGUCUU 3'


            |||| |:|| ||| ||| || |::| ||||:


target  3':ACCAGUCUUCUCCU---GUCCUGAAC-UCGUCUUUCGCACUCUCGGGGCUCAGG 5'

 -20.10 1 RIC-seq
chrX:139865363:139865406:[+] chr15:89659697:89659748:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAACAACUCCGGGUCUUCCAGC-----------GA-CUUCAAGUCUUC 3'


            |||| |:|| ||| ||| || |::| ||||:|


target  3':ACCAGUCUUCUCCU---GUCCUGAAC-UCGUCUUUCGCACUCUCGGGGCUCAGGAC 5'

 -21.20 16 RIC-seq
chrX:139865389:139865406:[+] chr15:89659697:89659719:[+] nonBSJ supported CDS

circRNA 5':CAGCGA-----CUUCAAGUCUUC 3'


            |||| |::| ||||:|


target  3':UUCGCACUCUCGGGGCUCAGGAC 5'

 -11.20 1 RIC-seq
chrX:139865806:139865836:[+] chr15:89698596:89698628:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAA-AGAAAUCCA-GGUCUUCCAGUCA 3'


            |||||| ||| ||| ||| :||


target  3':UAAGGUCCCGUCUACUGGUACCACUAUAGUAGA 5'

 -18.60 34 RIC-seq
chrX:139866051:139866072:[+] chr15:89698607:89698633:[+] nonBSJ supported CDS

circRNA 5':CGGAUAAUUU--GGGUCUU---CC-UGA 3'


            || :||||: |||: || ||


target  3':ACC-GUUAAGGUCCCGUCUACUGGUACC 5'

 -11.30 1 RIC-seq
chrX:139866328:139866343:[+] chr15:89731464:89731478:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGG 3'


            ||| |||||||||


target  3':CAGGCACAGAAGGUC 5'

 -19.90 1 RIC-seq
chrX:139866629:139866648:[+] chr15:89698609:89698632:[+] nonBSJ supported CDS

circRNA 5':AGCAUCUCCAGGGCUU----CCAG 3'


            ||| |||||||| |||


target  3':CCGUUAAGGUCCCGUCUACUGGUA 5'

 -23.00 30 RIC-seq
chrX:139866630:139866648:[+] chr15:89698609:89698630:[+] nonBSJ supported CDS

circRNA 5':GCAUCUCCAGGGCUU----CCAG 3'


            || |||||||| |||


target  3': GUUAAGGUCCCGUCUACUGGUA 5'

 -18.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:89698607:89698633:[+] target - chr15:89698630-89698631 G>T LICA-CN ICGC
chr15:89698609:89698630:[+] target - chr15:89698630-89698631 G>T LICA-CN ICGC
chr15:89698609:89698632:[+] target - chr15:89698630-89698631 G>T LICA-CN ICGC
chrX:139866768:139866800:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866773:139866805:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC