Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865822:139865847:[+] chr14:81836652:81836676:[-] nonBSJ supported Intron

circRNA 5':CAGGUC-UUCCAGUCAGUC-AGUGUCUU 3'


            | :|| |||||:| |:| |||:|||


target  3':UUGUAGAAAGGUUA--CGGUUCAUAGA 5'

 -19.30 1 RIC-seq
chrX:139865822:139865850:[+] chr14:81836652:81836680:[-] nonBSJ supported Intron

circRNA 5':CAGGUC-UUCCAGUCAGUC-AGUGUC-UUCCA 3'


            | :|| |||||:| |:| |||:|| ||||


target  3':UUGUAGAAAGGUUA--CGGUUCAUAGAAAGG 5'

 -24.20 1 RIC-seq
chrX:139865825:139865852:[+] chr14:81834613:81834646:[-] nonBSJ supported Intron

circRNA 5': GUCUUC-CAG---UCAG--UCAGUGUCUUCCAGA 3'


            | |||| | |||| |||||||| | ||


target  3':AC-GAAGUGGAAAGAGUCUGAGUCACAGUUGAUCC 5'

 -21.10 1 RIC-seq
chrX:139865826:139865852:[+] chr14:81834614:81834646:[-] nonBSJ supported Intron

circRNA 5':UCUUC-CAG---UCAG--UCAGUGUCUUCCAGA 3'


            |||| | |||| |||||||| | ||


target  3':CGAAGUGGAAAGAGUCUGAGUCACAGUUGAUCC 5'

 -20.30 1 RIC-seq
chrX:139866757:139866826:[+] chr14:81799420:81799468:[-] nonBSJ supported Intron

circRNA 5':AUGUCUUCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGG--UCUUCCAGUGUCUGCAAUAUCCAGGU 3'


            |||||| ||| |||| :||| ||| ||| |||| |||| |||||:|


target  3': ACAGAAUGUU-CAGA---UACAAACCUA----------AGUAUAAAGAA--------ACGUAUUAGGUUCU 5'

 -28.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:81799420:81799468:[-] target - chr14:81799462-81799463 T>C LAML-KR ICGC
chrX:139866757:139866826:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC