Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866575:139866600:[+] chr14:47895088:47895104:[-] nonBSJ supported Intron

circRNA 5':AACUAAGCUACGUCUUCCAACAAAUC 3'


            |||||: ||| ||||||


target  3':AUGAUUU-------AAG--UGUUUAC 5'

 -5.20 2 RIC-seq
chrX:139866620:139866655:[+] chr14:47678894:47678925:[-] nonBSJ supported Intron

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUUCC-AGCAUCUGC 3'


            ||| || ||| |:|| |||


target  3':ACCAACAUAC---AG-GGUGAACAUUUAUUGU-GACU 5'

 -8.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866575:139866600:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC