Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866653:139866664:[+] chr12:123777003:123777013:[-] nonBSJ supported 3UTR

circRNA 5':UGCUCGUCUUCC 3'


            |||| : |||


target  3':CCGAGGGUAAG 5'

 -8.20 1 RIC-seq
chrX:139866653:139866664:[+] chr12:123777003:123777014:[-] nonBSJ supported 3UTR

circRNA 5':UGCUCGUCUUCC 3'


            |||| : |||


target  3':CCGAGGGUAAGA 5'

 -8.40 30 RIC-seq
chrX:139865798:139865840:[+] chr12:123804979:123805011:[-] nonBSJ supported CDS

circRNA 5':AUCAGUGUC-UUC-CAGAAAGAAAUCCAGGUCUUCC-AGUCAGUCA 3'


            ||||: | ||| ||| ||:| || ||| :||


target  3':GAGUCGUUGCAAGAGUC-----------CCGGU-GGUUCAAGUAG 5'

 -20.70 2 RIC-seq
chrX:139865798:139865840:[+] chr12:123804979:123805012:[-] nonBSJ supported CDS

circRNA 5':AUCAGUGUC-UUC-CAGAAAGAAAUCCAGGUCUUCC-AGUCAGUCA 3'


            ||||: | ||| ||| ||:| || ||| :||


target  3':GAGUCGUUGCAAGAGUC-----------CCGGU-GGUUCAAGUAGC 5'

 -20.50 12 RIC-seq