Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866201:139866218:[+] chr12:56557240:56557256:[-] nonBSJ supported 3UTR

circRNA 5':AAUCCGGGUCUUCCAGGA 3'


            |||| |||:||||:


target  3':AUAGGAG-AGAGGGUCUG 5'

 -18.30 1 RIC-seq
chrX:139866205:139866285:[+] chr12:56557222:56557271:[-] nonBSJ supported 3UTR

circRNA 5':CGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUCCAGAC--UAUCCAUGUCUUC 3'


            ||| ||||| ||| |:||:| || | |||:|||||| ||| |::||||


target  3':UCCC-----------------------GUCGUA-AGG-GUAGGAUA-------GG-AGAGAGGGUCUGUAAUAUUUGUAGAAA 5'

 -38.10 9 RIC-seq
chrX:139866231:139866290:[+] chr12:56557225:56557256:[-] nonBSJ supported 3UTR

circRNA 5':CCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUCCAGACUAUCCAUGUCUUCCAGAA 3'


            ||||| |:||| |||||| | |||:|||||


target  3':CGUCGUA---------------------------AGGGUAGGAUAGG-AGAGAGGGUCUG 5'

 -34.20 11 RIC-seq
chrX:139866232:139866290:[+] chr12:56557225:56557256:[-] nonBSJ supported 3UTR

circRNA 5': CAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUCCAGACUAUCCAUGUCUUCCAGAA 3'


            ||||| |:||| |||||| | |||:|||||


target  3':CGUCGUA---------------------------AGGGUAGGAUAGG-AGAGAGGGUCUG 5'

 -33.90 1 RIC-seq
chrX:139865353:139865380:[+] chr12:56574817:56574839:[-] nonBSJ supported CDS

circRNA 5':ACCUGUGUCAAGGUCUUCCAACAACUCC 3'


            ||| |||| |||||||| |||


target  3':AGGAAACAG-UCCAGAAGAAC---GAG 5'

 -22.00 1 RIC-seq
chrX:139865353:139865381:[+] chr12:56574817:56574841:[-] nonBSJ supported CDS

circRNA 5':ACCUGUGUCAAGGUCUUCCAACAACUCCG 3'


            ||| |||| |||||||| ||||


target  3':AGGAAACAG-UCCAGAAGAAC---GAGGA 5'

 -25.90 1 RIC-seq
chrX:139865353:139865388:[+] chr12:56574817:56574846:[-] nonBSJ supported CDS

circRNA 5':ACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUC 3'


            ||| |||| |||||||| |||| |||||


target  3':AGGAAACAG-UCCAGAAGAAC---GAGG---AGAAGA 5'

 -28.80 1 RIC-seq
chrX:139865353:139865388:[+] chr12:56574817:56574848:[-] nonBSJ supported CDS

circRNA 5':ACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUC 3'


            ||| |||| |||||||| |||| |||:


target  3':AGGAAACAG-UCCAGAAGAAC---GAGGAGAAGAGA 5'

 -29.60 10 RIC-seq
chrX:139865353:139865403:[+] chr12:56574817:56574870:[-] nonBSJ supported CDS

circRNA 5':ACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUU-----CCA-GC---GACUUCAAGUC 3'


            ||| |||| |||||||| |||| |||: ||| || ||||| |||


target  3':AGGAAACAG-UCCAGAAGAAC---GAGGAGAAGAGACACCGGUGCGAAACUGAA--UCAC 5'

 -37.00 14 RIC-seq
chrX:139865354:139865388:[+] chr12:56574817:56574848:[-] nonBSJ supported CDS

circRNA 5': CCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUC 3'


            ||| |||| |||||||| |||| |||:


target  3':AGGAAACAG-UCCAGAAGAAC---GAGGAGAAGAGA 5'

 -29.60 1 RIC-seq
chrX:139865357:139865388:[+] chr12:56574821:56574848:[-] nonBSJ supported CDS

circRNA 5':GUGUCAAGGUCUUCCAACAACUCCGGGUCUUC 3'


            |||| |||||||| |||| |||:


target  3':AACAG-UCCAGAAGAAC---GAGGAGAAGAGA 5'

 -25.30 1 RIC-seq
chrX:139866359:139866390:[+] chr12:56578841:56578867:[-] nonBSJ supported CDS

circRNA 5': AGCAAAUCCACGUCUUCCAACAAAGCCAUGUC 3'


            |:|| |||||:| |||||:


target  3':UUUGUAAAGGUGUAACGCCA------GGUACGC 5'

 -15.90 16 RIC-seq
chrX:139866367:139866390:[+] chr12:56578842:56578867:[-] nonBSJ supported CDS

circRNA 5':CACGUCUUCCAACAAAG---CCAUGUC 3'


            ||:| ||||| |||||:


target  3':UUGUA-AAGGUGUAACGCCAGGUACGC 5'

 -14.20 3 RIC-seq