Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866611:139866642:[+] chr12:88554606:88554632:[+] nonBSJ supported CDS

circRNA 5':UAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGC 3'


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target  3': UAUGGA---CCACUUAUGACCUUCAA-CCCU 5'

 -6.90 12 RIC-seq
chrX:139866617:139866642:[+] chr12:88554606:88554630:[+] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUCCAGCAUCUCCAGGGC 3'


            || ||| |||


target  3':UGGACCACUUAUGACCUUCAA-CCCU 5'

 -6.60 18 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr12:88554606:88554630:[+] target 2690766 chr12:88554624-88554625 A>AC Lissencephaly_8 ClinVar
chr12:88554606:88554632:[+] target 2690766 chr12:88554624-88554625 A>AC Lissencephaly_8 ClinVar