Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866772:139866804:[+] chr4:77065417:77065446:[-] nonBSJ supported 5UTR

circRNA 5':UCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUU 3'


            || ||| |||| |: || :|||:


target  3':UGGAAACAAGACUCAU-GGUGGUUUC-UCAGG 5'

 -14.40 1 RIC-seq
chrX:139865868:139865921:[+] chr4:77036571:77036628:[-] nonBSJ supported CDS

circRNA 5':CACCAAAUCCAGGUCUUCCAGUCAAUCCACAUCUUCCG-GAAAA-AAUCC--------AGGUCU 3'


            |||| :||||| || ||| |||| || |||| |||:||


target  3': UGGUCGAAAUAUAGAAGAUC---UAGC---AGAAAUUACUACGAUUAGUUUACCGAUUCCGGAA 5'

 -15.80 1 RIC-seq
chrX:139865870:139865887:[+] chr4:77036611:77036631:[-] nonBSJ supported CDS

circRNA 5':CCAAAUCC---AGGUCUUCCA 3'


            ||||| |||:|||||


target  3':AGUUUACCGAUUCCGGAAGGA 5'

 -16.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:77036571:77036628:[-] target 2572662 chr4:77036623-77036624 G>A not provided ClinVar
chr4:77036611:77036631:[-] target 2572662 chr4:77036623-77036624 G>A not provided ClinVar
chr4:77036611:77036631:[-] target 2572661 chr4:77036629-77036630 C>T not provided ClinVar
chr4:77036611:77036631:[-] target 2506593 chr4:77036630-77036631 CTGT>C Dystonia_37,_early-onset,_with_striatal_lesions ClinVar
chrX:139865868:139865921:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139866772:139866804:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC