Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866583:139866612:[+] chr4:99363152:99363184:[+] nonBSJ supported CDS

circRNA 5':UACGUCUUCCAA---CAAAUCCAUGU-CUUCCUA 3'


            ||:||| ||||||| ||| ||||||


target  3':CUGUAGAUCUUUUCGGUUUAGG-ACAUGAAGGAA 5'

 -24.90 1 RIC-seq
chrX:139866665:139866699:[+] chr4:99363155:99363184:[+] nonBSJ supported CDS

circRNA 5':AACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUC 3'


            |||||| |||: ||| ||||: ||||


target  3':CUGUAGAUCUUUUC--GGUU-UAG-GACAU-GAAG 5'

 -19.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866583:139866612:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC