Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865674:139865721:[+] chr4:123276999:123277042:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGAAAAAUCUGUGUCUUC-CACCAAAUCCAAG-UCUUC-CAGUAA 3'


            |:||| |||| :||: | || ||||: ||||| |||||


target  3':UGGAGG-------AGACUUAGGUGAGUUGUUUGAUCUUAAGAAGUGUCAUC 5'

 -28.40 1 RIC-seq
chrX:139865674:139865721:[+] chr4:123277000:123277042:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGAAAAAUCUGUGUCUUC-CACCAAAUCCAAG-UCUUC-CAGUAA 3'


            |:||| |||| :||: | || ||||: ||||| |||||


target  3':UGGAGG-------AGACUUAGGUGAGUUGUUUGAUCUUAAGAAGUGUCAU 5'

 -28.20 13 RIC-seq
chrX:139865711:139865757:[+] chr4:123277000:123277042:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGUAAAUCUAGUUCUUCCAGAAAAAUCUAGA--UCUUC-CAGUC 3'


            |:||| | ||||:| :|| ||:| ||||| ||||| ||||


target  3':UGGAGGAGACUUAGGU-GAGUU-GUUU-----GAUCUUAAGAAGUGUCAU 5'

 -26.00 14 RIC-seq
chrX:139865739:139865764:[+] chr4:123270386:123270417:[+] nonBSJ supported CDS

circRNA 5':AAAUCUA-----GAUCUU-CCAG-UCAAUCAGU 3'


            |||||| |||||| |||| :||| |||


target  3':CUUAGAUUAACACUAGAAGGGUCUGGUU-GUCU 5'

 -20.90 1 RIC-seq
chrX:139865739:139865793:[+] chr4:123270355:123270417:[+] nonBSJ supported CDS

circRNA 5':AAAUCUA-----GAUCUU-CCAG-UCAAUCAG-UGU-CUUCCAGAAAGAAAUCCAGGU--CUUCCA 3'


            |||||| |||||| |||| :||| ||| ::| || || || |:| |||||


target  3':CUUAGAUUAACACUAGAAGGGUCUGGUU-GUCUGUACGACUAGAGAGCU--AGUGCUAAUGAAGGA 5'

 -27.90 2 RIC-seq
chrX:139865739:139865798:[+] chr4:123270366:123270417:[+] nonBSJ supported CDS

circRNA 5':AAAUCUA-----GAUCUU-CCAG-UCAAUCAG-UGU-CUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAA 3'


            |||||| |||||| |||| :||| ||| ::| || |:|||: | :|||


target  3':CUUAGAUUAACACUAGAAGGGUCUGGUU-GUCUGUACGA----------------CUAGAGAGCUAGUG 5'

 -27.20 7 RIC-seq
chrX:139865739:139865805:[+] chr4:123270343:123270417:[+] nonBSJ supported CDS

circRNA 5':AAAUCUA-----GAUCUU-CCAG-UCAAUCAG-UGU-CUUCCAGAAAGAAAUCCAGGU--CUUCCAGUCAAUCAG-UGU 3'


            |||||| |||||| |||| :||| ||| ::| || || || |:| ||||| ||| :|


target  3':CUUAGAUUAACACUAGAAGGGUCUGGUU-GUCUGUACGACUAGAGAGCU--AGUGCUAAUGAAGGAUGACU-GUCUGCC 5'

 -28.90 2 RIC-seq
chrX:139865739:139865809:[+] chr4:123270356:123270417:[+] nonBSJ supported CDS

circRNA 5':AAAUCUA-----GAUCUU-CCAG-UCAAUCAG-UGU-CUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUC 3'


            |||||| |||||| |||| :||| ||| ::| || |:|||: | :||| :| ||||


target  3':CUUAGAUUAACACUAGAAGGGUCUGGUU-GUCUGUACGA----------------CUAGAGAGCUAGUGC--UAAUGAAGG 5'

 -29.80 5 RIC-seq
chrX:139865904:139865927:[+] chr4:123268752:123268773:[+] nonBSJ supported CDS

circRNA 5':CGGAAAAAAUCCAGGUCUUCCAGC 3'


            || :||||||||| |||


target  3': CCGACGA-GGGUCCAGAACGUCA 5'

 -20.40 6 RIC-seq
chrX:139866014:139866035:[+] chr4:123249328:123249347:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCACGUCUUCCCA 3'


            ||||| :|||| |


target  3':UGUCUUGUACUA--GGAAGUGA 5'

 -8.30 4 RIC-seq
chrX:139866190:139866217:[+] chr4:123268752:123268770:[+] nonBSJ supported CDS

circRNA 5':AGCUUCCAAAAAAUCCGGGUCUUCCAGG 3'


            |||:|| :|||||| |||


target  3':ACGAGGG---------UCCAGAACGUCA 5'

 -21.30 4 RIC-seq
chrX:139866426:139866449:[+] chr4:123166272:123166293:[+] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAGGUACGUCUUCCA 3'


            ||| ||||||| ||||| |


target  3':AAAGACU-UUUCCAU-CAGAACGA 5'

 -13.20 7 RIC-seq
chrX:139866440:139866449:[+] chr4:123274302:123274311:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCA 3'


            |:||||||


target  3':GGUAGAAGGG 5'

 -12.80 8 RIC-seq
chrX:139866682:139866704:[+] chr4:123239368:123239396:[+] nonBSJ supported CDS

circRNA 5':CAGCAUCUCU----GUGUC-UUC-CAGCA 3'


            |:||||||| :|||| ||| ||||


target  3':CUUGUAGAGAAGAUUACAGUAAGUGUCGG 5'

 -24.90 3 RIC-seq
chrX:139866682:139866722:[+] chr4:123239356:123239396:[+] nonBSJ supported CDS

circRNA 5':CAGCAUCUCU----GUGUC-UUC-CAGCAUCUUCAUGUCUUCCAACA 3'


            |:||||||| :|||| ||| |||| ||:: ||| |||


target  3':CUUGUAGAGAAGAUUACAGUAAGUGUCG-----GUGUCUAAGAUUG 5'

 -26.70 21 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:123276999:123277042:[+] target - chr4:123277030-123277031 A>G BTCA-JP ICGC
chr4:123276999:123277042:[+] target - chr4:123277033-123277034 C>T LINC-JP ICGC
chr4:123277000:123277042:[+] target - chr4:123277030-123277031 A>G BTCA-JP ICGC
chr4:123277000:123277042:[+] target - chr4:123277033-123277034 C>T LINC-JP ICGC