Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865598:139865640:[+] chr4:83292680:83292718:[-] nonBSJ supported CDS

circRNA 5':ACG-UCUUCCAGGAAAUCCAUGUCUUCCAAUAAUUUCA-AG-GUCU 3'


            |: |||||| | ||:| || :|||| || |||


target  3':GGUAAGAAGGGCGAC-----ACGGCAGCGAC--GAAGUCUCACAGC 5'

 -15.40 22 RIC-seq
chrX:139865600:139865640:[+] chr4:83292683:83292718:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGGAAAUCCAUGUCUUCCAAUAAUUUCA-AG-GUCU 3'


            |||||| | ||:| || :|||| || |||


target  3':AAGAAGGGCGAC-----ACGGCAGCGAC--GAAGUCUCACAGC 5'

 -15.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:83292680:83292718:[-] target 3897622 chr4:83292712-83292713 A>AGT Intellectual_disability ClinVar
chr4:83292683:83292718:[-] target 3897622 chr4:83292712-83292713 A>AGT Intellectual_disability ClinVar