Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865941:139865961:[+] chr4:113502830:113502849:[-] nonBSJ supported CDS

circRNA 5':CCUGAAGAUCCACGUCUUCCA 3'


            ||||||||| :|||||


target  3':CGACUUCUAGAAA-GGAAGGC 5'

 -21.20 30 RIC-seq
chrX:139866044:139866072:[+] chr4:113507702:113507742:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCC-GGAUAA------UUUGGGUC------UUCCUGA 3'


            |:|: ||| |: |:|:| :|||||


target  3':ACGGGUGAACCUUUCGUGUCGAGUCUCGGUGAAUAGAGGAC 5'

 -15.40 1 RIC-seq
chrX:139866044:139866072:[+] chr4:113507702:113507743:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCC-GGAUAA------UUUGGGUC------UUCCUGA 3'


            |:|: ||| |: |:|:| :|||||


target  3':ACGGGUGAACCUUUCGUGUCGAGUCUCGGUGAAUAGAGGACG 5'

 -15.60 17 RIC-seq
chrX:139866602:139866626:[+] chr4:113539888:113539912:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCUAUAUCUCCAGG-UCUU 3'


            |:||||| |||: |||


target  3':AAUAGAAGAACUUACA-GUCUAAGAC 5'

 -10.60 2 RIC-seq
chrX:139866644:139866697:[+] chr4:113539815:113539866:[-] nonBSJ supported CDS

circRNA 5': UCC--AGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU 3'


            ||| ||||| || ||| ||| |||:|:|| ||||


target  3':GAGGACUCGUAAAAGAAAUUACUCUUGACUAGGAAAUUA----CGUGGGGA-ACAGU 5'

 -22.90 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:113539888:113539912:[-] target - chr4:113539912-113539913 G>T LICA-CN ICGC