Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866563:139866583:[+] chr4:134113546:134113565:[+] nonBSJ supported 3UTR

circRNA 5':UAUAUGUCUUCCAACUAAGCU 3'


            |||| || :||| ||


target  3':CUAUA-AGUGGGUACUAACGU 5'

 -6.10 4 RIC-seq
chrX:139865433:139865464:[+] chr4:134070600:134070634:[+] nonBSJ supported 5UTR

circRNA 5': UCCUGAG-CU----UCCAGAAAAUCCACAUCUUCCAG 3'


            || ||| || ||| ||| |||| ||||


target  3':AAGU-CUCAGAACCAAGGGAGAC-AGGAGUAG-AGGUG 5'

 -18.10 1 RIC-seq
chrX:139865433:139865479:[+] chr4:134070586:134070634:[+] nonBSJ supported 5UTR

circRNA 5': UCCUGAG-CU----UCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUC 3'


            || ||| || ||| ||| |||| |||| ||:||:


target  3':AAGU-CUCAGAACCAAGGGAGAC-AGGAGUAG-AGGUGGCAAUGA-ACGGAGA 5'

 -23.40 1 RIC-seq
chrX:139866392:139866418:[+] chr4:134071107:134071124:[+] nonBSJ supported 5UTR

circRNA 5': UCCAUCAAAUUAAUGUCUUCCAGCCUA 3'


            ||| :|: ||||||||


target  3':AAGG----------GCGUUAGGUCGGAG 5'

 -18.00 1 RIC-seq