Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865436:139865484:[+] chr4:89788397:89788444:[-] nonBSJ supported Intron

circRNA 5': UGAGCUUCCAGAAAAUCC---ACAUCU-UCCAGACAAUCCAU--GUCUUCCGGAC 3'


            |||:| || ||| |||:|| ||| ||||: :||:||||||


target  3':GACUUGUU--UCGAAUAGAAUUUGUGGACAGG------AGGUGAAUAGGAGGCCUU 5'

 -32.80 1 RIC-seq
chrX:139865468:139865484:[+] chr4:89788426:89788444:[-] nonBSJ supported Intron

circRNA 5':AUCCAU--GUCUUCCGGAC 3'


            ||||: :||:||||||


target  3':GAGGUGAAUAGGAGGCCUU 5'

 -22.10 1 RIC-seq