Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866598:139866634:[+] chr15:52201071:52201109:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAUGUCU--UCCUAUAUCUCCAGGUCUUCCA-GCAUC 3'


            |||| |||| |||: :||||| :|||


target  3':AAGGU-CAGAAAAGGGAAGAUGGGUCCUUUUAAAAUGUAC 5'

 -23.60 1 RIC-seq
chrX:139866598:139866658:[+] chr15:52201051:52201109:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAUGUCU--UCCUAUAUCUCCAGGUCUUCCA-GCAUCUCCAGGGCUU-CCAGCAUCUGCUCG 3'


            |||| |||| |||: :||||| :||| |: |||:||| ||:|


target  3':AAGGU-CAGAAAAGGGAAGAUGGGUCCUUUUAAAAUGUA-----CUACAGUGGUUGUACUCGGGA 5'

 -37.30 1 RIC-seq
chrX:139866282:139866336:[+] chr15:52161501:52161562:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAAAAUCCUU----GUCUUCCCUCAAA------UCCAUAGCUUCCGAAAAAUCCAGGUC 3'


            |||||| ||||||||| |||| ||||| |||||:|


target  3':AGAGGUCACAUCCCGUGUAUCAGAAGGGACAGAAAUACGAGGUUACGAAGAAAG---AGGUCUAU 5'

 -37.90 2 RIC-seq
chrX:139866282:139866345:[+] chr15:52161492:52161562:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAAAAUCCUU----GUCUUCCCUCAAA------UCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAA 3'


            |||||| ||||||||| |||| ||||| |||||:| ||||


target  3':AGAGGUCACAUCCCGUGUAUCAGAAGGGACAGAAAUACGAGGUUACGAAGAAAG---AGGUCUAUACUUUCCUC 5'

 -42.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866282:139866336:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866282:139866345:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC