Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865510:139865536:[+] chr15:49285077:49285103:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGUAAAUC--AAGUCUUCCAG 3'


            | |||||||| ||| |||| |||||


target  3':AC-GAAGGUCAGGUAGACUUCA-AAGGUG 5'

 -22.80 2 RIC-seq
chrX:139865510:139865538:[+] chr15:49285077:49285104:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGUAAAUC--AAGUCUUCCAGCA 3'


            | |||||||| ||| |||| ||||| |


target  3':AC-GAAGGUCAGGUAGACUUCA-AAGGUGG 5'

 -25.60 12 RIC-seq
chrX:139866114:139866134:[+] chr15:49319656:49319679:[-] nonBSJ supported CDS

circRNA 5':CACAUCUU-CCAAUG---GCCUCCA 3'


            |||| ||||| :|| ||


target  3': UGUAACCUGGUUAAAUGUGGUGGA 5'

 -11.20 1 RIC-seq
chrX:139866121:139866134:[+] chr15:49319663:49319679:[-] nonBSJ supported CDS

circRNA 5':UCCAAUG---GCCUCCA 3'


            ||||| :|| ||


target  3':UGGUUAAAUGUGGUGGA 5'

 -9.50 33 RIC-seq
chrX:139866317:139866340:[+] chr15:49303928:49303962:[-] nonBSJ supported CDS

circRNA 5':GCUUCC---GAAA-AAUC--------CAGGUCUUCC 3'


            ||||| |||| |||| ||:||| ||


target  3': GAAGGACCCUUUGUUAGAGGACACCGUUCAGUAGU 5'

 -14.40 2 RIC-seq
chrX:139866317:139866349:[+] chr15:49303928:49303962:[-] nonBSJ supported CDS

circRNA 5':GCUUCCGAAAAAUCCAGGUCUUC-----CAGGAAAUCC 3'


            ||||| ::|||:| ||:| |||


target  3': GAAGGACCCUUUG--UUAGAGGACACCGUUCAGUAGU 5'

 -15.00 14 RIC-seq
chrX:139865470:139865520:[+] chr15:49283114:49283159:[-] nonBSJ supported Intron

circRNA 5':CCAUGUCUUCCGGACAAUCCAUGU-CUUCC-AAGAAGCUCCAAGUCUUCCAGU 3'


            ||| ||||||: || |||: ||| ||| :|| ||| |||||


target  3':AGUA-AGAAGGUG-GUAAUGUAUUUGAACAUUUCAGUGAC-UUC---AGGUC 5'

 -21.60 3 RIC-seq
chrX:139865470:139865520:[+] chr15:49283114:49283160:[-] nonBSJ supported Intron

circRNA 5':CCAUGUCUUCCGGACAAUCCAUGU-CUUCC-AAGAAGCUCCAAGUCUUCCAGU 3'


            ||| ||||||: || |||: ||| ||| :|| ||| |||||


target  3':AGUA-AGAAGGUG-GUAAUGUAUUUGAACAUUUCAGUGAC-UUC---AGGUCC 5'

 -22.00 17 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866317:139866340:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866317:139866349:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC