Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866190:139866251:[+] chr10:79795290:79795334:[+] nonBSJ supported CDS

circRNA 5':AGCUUCCAAAAAAUCCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCA 3'


            ||| :|||::| ||| |||||| ||| ||:|||||


target  3':CCGAUCAAAAA--GGGCUUA-AAG-----------ACAGAAUC-CGUGACA--GCGGAAGGG 5'

 -27.70 19 RIC-seq
chrX:139866203:139866251:[+] chr10:79795290:79795322:[+] nonBSJ supported CDS

circRNA 5':UCCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCA 3'


            |||::| ||| |||||| ||| ||:|||||


target  3': GGCUUA-AAG-----------ACAGAAUC-CGUGACA--GCGGAAGGG 5'

 -24.80 1 RIC-seq
chrX:139866203:139866251:[+] chr10:79795290:79795323:[+] nonBSJ supported CDS

circRNA 5':UCCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCA 3'


            |||::| ||| |||||| ||| ||:|||||


target  3':GGGCUUA-AAG-----------ACAGAAUC-CGUGACA--GCGGAAGGG 5'

 -26.20 1 RIC-seq
chrX:139866216:139866251:[+] chr10:79795290:79795321:[+] nonBSJ supported CDS

circRNA 5':GGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCA 3'


            ||| |||||| ||| ||:|||||


target  3':GCUUAAAG-ACAGAAUC-CGUGACA--GCGGAAGGG 5'

 -22.20 18 RIC-seq
chrX:139866369:139866395:[+] chr10:79795290:79795313:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGCCAUGUCUUCCA 3'


            ||||| || :|:|||||


target  3':ACAGAAUCC-GUGACA--GCGGAAGGG 5'

 -14.90 1 RIC-seq
chrX:139866452:139866487:[+] chr10:79795371:79795416:[+] nonBSJ supported CDS

circRNA 5': AAAGGUAC--GUCUU----CCAACAAAGGUAUGUCU---UCCAAC 3'


            |||| :| ||||| ||| ||||: ||| |||||


target  3':GUUUCGGUCAACAGAACGGUGGUGGUUUUACUCAAGACUUAGGUUU 5'

 -18.70 1 RIC-seq
chrX:139866458:139866488:[+] chr10:79795393:79795444:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAA-----------------CAAAGGUA--UGUCUU-CCAACA 3'


            |:| |||| ||||| :| |||||| ||| ||


target  3':CGUAUUAGGUCCCUUAGUAUUUAGUACGGUUUCGGUCAACAGAACGGUGGUG 5'

 -18.20 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:79795290:79795313:[+] target - chr10:79795298-79795299 G>A LICA-CN ICGC
chr10:79795290:79795321:[+] target - chr10:79795298-79795299 G>A LICA-CN ICGC
chr10:79795290:79795322:[+] target - chr10:79795298-79795299 G>A LICA-CN ICGC
chr10:79795290:79795323:[+] target - chr10:79795298-79795299 G>A LICA-CN ICGC
chr10:79795290:79795334:[+] target - chr10:79795298-79795299 G>A LICA-CN ICGC