Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865966:139865987:[+] chr10:73963234:73963264:[-] nonBSJ supported CDS

circRNA 5':AUCCAUG-------UCUUCC-AGAAAAUCC 3'


            ||||| |||||| || :||


target  3':GAGGUAAAGAUAAAAGAAGGAUCACAGGGGA 5'

 -12.80 1 RIC-seq
chrX:139866274:139866313:[+] chr10:73963234:73963273:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAA-UCC 3'


            ||||| ||| |||| || |:||||| |||


target  3':GAGGUAAAGAUAAAAGA--AGGAUCACAGGGGAGAGAAAGGU 5'

 -25.80 1 RIC-seq
chrX:139866274:139866321:[+] chr10:73963234:73963285:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAA-UCCA----UA-GCUUC 3'


            ||||| ||| |||| || |:||||| |||| || ||:|


target  3':GAGGUAAAGAUAAAAGA--AGGAUCACAGGGGAGAGAAAGGUUGAUAUACGGAC 5'

 -29.10 1 RIC-seq
chrX:139866274:139866338:[+] chr10:73963234:73963285:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAA-UCCAUAGCUUCCGAAAAAUCCAGGUCUU 3'


            ||||| ||| |||| || |:||||| |||| :|| |:||


target  3':GAGGUAAAGAUAAAAGA--AGGAUCACAGGGGAGAGAAAGGU--UGAUAUA----------CGGAC 5'

 -29.50 24 RIC-seq
chrX:139866275:139866338:[+] chr10:73963234:73963285:[-] nonBSJ supported CDS

circRNA 5': UCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAA-UCCAUAGCUUCCGAAAAAUCCAGGUCUU 3'


            ||||| ||| |||| || |:||||| |||| :|| |:||


target  3':GAGGUAAAGAUAAAAGA--AGGAUCACAGGGGAGAGAAAGGU--UGAUAUA----------CGGAC 5'

 -29.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:73963234:73963264:[-] target 985780 chr10:73963243-73963244 T>TA Inborn_genetic_diseases ClinVar
chr10:73963234:73963273:[-] target 985780 chr10:73963243-73963244 T>TA Inborn_genetic_diseases ClinVar
chr10:73963234:73963285:[-] target 985780 chr10:73963243-73963244 T>TA Inborn_genetic_diseases ClinVar
chrX:139866274:139866321:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866274:139866338:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866275:139866338:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC