Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865603:139865666:[+] chr10:51592374:51592443:[-] nonBSJ supported 3UTR

circRNA 5':UUC-CAGGAAAUCCAUGUCUUCCAAUAAUUUCA----------AGGUCUUCCAUCAAAUACAGAUCUUCCAGCUA 3'


            || ||| ||||| :|| |||||| ||||| |||| :| ||:| |:||


target  3': AGUGUCGUUUAGUUUUAG-AGGUUAA-AAAGUUUGAUUAACAUCCAUCUUCUCUCUCUUA-UU-GAGGUUUGAC 5'

 -25.70 1 RIC-seq
chrX:139865605:139865639:[+] chr10:51592376:51592408:[-] nonBSJ supported 3UTR

circRNA 5':CCAGGAAAUCCAUGUCUUCCAAUAAUUUCAAGGUC 3'


            ||| ||||| :|| |||||| ||||||: |


target  3':UGUCGUUUAGUUUUAG-AGGUUAA-AAAGUUUGAU 5'

 -22.40 1 RIC-seq
chrX:139865605:139865666:[+] chr10:51592376:51592443:[-] nonBSJ supported 3UTR

circRNA 5':CCAGGAAAUCCAUGUCUUCCAAUAAUUUCA----------AGGUCUUCCAUCAAAUACAGAUCUUCCAGCUA 3'


            ||| ||||| :|| |||||| ||||| |||| :| ||:| |:||


target  3':UGUCGUUUAGUUUUAG-AGGUUAA-AAAGUUUGAUUAACAUCCAUCUUCUCUCUCUUA-UU-GAGGUUUGAC 5'

 -25.10 32 RIC-seq