Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865937:139865961:[+]	chr10:89516620:89516645:[-]	nonBSJ supported	CDS	circRNA 5':UCUUCCUGAAGAUCCA-CGUCUUCCA 3' \|\|\|\|\|\|\|\|\|:\|:\|\|\| \|: \|\|\|\| target 3':UGAAGGACUUUUGGGUAGUCAAAGGA 5'	-28.00	1	RIC-seq
chrX:139865937:139865990:[+]	chr10:89516620:89516671:[-]	nonBSJ supported	CDS	circRNA 5':UCUUCCUGAAGAUCCA-CGUCUUCCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUG 3' \|\|\|\|\|\|\|\|\|:\|:\|\|\| \|: \|\|\|\| \|\|\| \|\|\| \|\|\|\| target 3':UGAAGGACUUUUGGGUAGUCAAAGGACCCGUUGA---AGAUCGUCCAGAU-GUACG 5'	-31.50	1	RIC-seq
chrX:139865937:139865994:[+]	chr10:89516620:89516674:[-]	nonBSJ supported	CDS	circRNA 5':UCUUCCUGAAGAUCCA-CGUCUUCCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUU 3' \|\|\|\|\|\|\|\|\|:\|:\|\|\| \|: \|\|\|\| \|\|\| \|\|\| \|\|\|\|:\|\| target 3':UGAAGGACUUUUGGGUAGUCAAAGGACCCGUUGA---AGAUCGUCCAGAU-GUACGGAU 5'	-37.40	25	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr10:89516620:89516671:[-]	target	-	chr10:89516662-89516663	G>T	LICA-CN	ICGC
chr10:89516620:89516674:[-]	target	-	chr10:89516662-89516663	G>T	LICA-CN	ICGC