Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865827:139865867:[+] chr2:48059743:48059789:[-] nonBSJ supported CDS

circRNA 5':CUUC-CAGUCAGU-------CAGUGUCUUCCAGAAAAAUCUACGU-CUUC 3'


            ||| |||||| | ||||| ||| || ||:| ||:|


target  3':AAAGUGUCAGUGACUACAAUGUCAC-GAA---CUACCACCCUGUACGAGGA 5'

 -19.90 2 RIC-seq
chrX:139865953:139865976:[+] chr2:48045958:48045980:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAGAAAAUCCAUGUCUU 3'


            |||||| || ||||||||:


target  3':ACAGAAGAUCGUG-AGGUACAGGU 5'

 -24.40 1 RIC-seq
chrX:139865961:139865994:[+] chr2:48045948:48045980:[-] nonBSJ supported CDS

circRNA 5': AGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUU 3'


            ||| ||| ||||||| || ||||||||:


target  3':AUCUA-UAGUAACAGAAGAUCGUG-AGGUACAGGU 5'

 -27.40 2 RIC-seq
chrX:139865968:139865994:[+] chr2:48045954:48045980:[-] nonBSJ supported CDS

circRNA 5':CCA-UGUCUUCCAGAAAAUCCAUGUCUU 3'


            || ||||||| || ||||||||:


target  3':AGUAACAGAAGAUCGUG-AGGUACAGGU 5'

 -25.90 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:48045948:48045980:[-] target 1329973 chr2:48045957-48045958 T>C Intellectual_developmental_disorder_with_dysmorphic_facies_and_behavioral_abnormalities ClinVar
chr2:48045948:48045980:[-] target 1329874 chr2:48045975-48045976 T>G Intellectual_developmental_disorder_with_dysmorphic_facies_and_behavioral_abnormalities ClinVar
chr2:48045954:48045980:[-] target 1329973 chr2:48045957-48045958 T>C Intellectual_developmental_disorder_with_dysmorphic_facies_and_behavioral_abnormalities ClinVar
chr2:48045954:48045980:[-] target 1329874 chr2:48045975-48045976 T>G Intellectual_developmental_disorder_with_dysmorphic_facies_and_behavioral_abnormalities ClinVar
chr2:48045958:48045980:[-] target 1329874 chr2:48045975-48045976 T>G Intellectual_developmental_disorder_with_dysmorphic_facies_and_behavioral_abnormalities ClinVar