Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866164:139866190:[+] chr2:44548229:44548254:[-] nonBSJ supported 3UTR

circRNA 5':AAAUCCUUGUCUUCCCUUAAAUCUAUA 3'


            ||||||| :|||||||: ||:|:


target  3':GUUAGGAAGGGAAGGGAGAUGAGGUG 5'

 -29.50 27 RIC-seq
chrX:139866165:139866190:[+] chr2:44548231:44548254:[-] nonBSJ supported 3UTR

circRNA 5':AAUCCUUGUCUUCCCUUAAAUCUAUA 3'


            |||||| :|||||||: ||:|:


target  3': UAGGAAGGGAAGGGAGAUGAGGUG 5'

 -27.80 1 RIC-seq
chrX:139866576:139866586:[+] chr2:44587510:44587520:[-] nonBSJ supported 5UTR

circRNA 5':ACUAAGCUACG 3'


            |||||| ||


target  3':AGAUUCGUUGA 5'

 -9.20 7 RIC-seq
chrX:139866619:139866626:[+] chr2:44587505:44587513:[-] nonBSJ supported 5UTR

circRNA 5':CAGG-UCUU 3'


            ||| |||


target  3':CUCCAAGAU 5'

 -4.30 1 RIC-seq