Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866579:139866593:[+] chr2:65357161:65357176:[-] nonBSJ supported 5UTR

circRNA 5':AAGCU-ACGUCUUCCA 3'


            ||| |||||||||


target  3':CUCGUUUGCAGAAGGG 5'

 -18.70 24 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:65357161:65357176:[-] target - chr2:65357176-65357177 C>T BTCA-JP ICGC
chrX:139866579:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866579:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC