Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865431:139865447:[+] chr2:39996098:39996123:[-] nonBSJ supported CDS

circRNA 5':AAUC-CUGAGCUU--------CCAGA 3'


            ||| ||||:||| |||:


target  3':GUAGUGACUUGAAACAUUCCCGGUUG 5'

 -13.30 1 RIC-seq
chrX:139865431:139865455:[+] chr2:39996098:39996122:[-] nonBSJ supported CDS

circRNA 5':AAUC-CUGAGCUUCCAGAAAAUCCAC 3'


            ||| ||||:||| |||


target  3':GUAGUGACUUGAAACAUUCCC-GGUU 5'

 -13.40 31 RIC-seq
chrX:139865432:139865455:[+] chr2:39996100:39996122:[-] nonBSJ supported CDS

circRNA 5':AUC-CUGAGCUUCCAGAAAAUCCAC 3'


            || ||||:||| |||


target  3': AGUGACUUGAAACAUUCCC-GGUU 5'

 -11.50 1 RIC-seq