Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866256:139866289:[+] chr15:43444024:43444053:[+] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCCAGACUAUCCAUGUCUUCCAGA 3'


            ||||: |:|||:| ||| :||| ||:|


target  3':CCGGUGA--AGGGUUUC-UAGUU-UAGAC-GUUUC 5'

 -16.80 2 RIC-seq
chrX:139866256:139866290:[+] chr15:43444024:43444053:[+] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCCAGACUAUCCAUGUCUUCCAGAA 3'


            ||||: |:|||:| ||| :||| ||:|


target  3':CCGGUGA--AGGGUUUC-UAGUU-UAGAC-GUUUC 5'

 -17.70 6 RIC-seq
chrX:139866258:139866290:[+] chr15:43444024:43444059:[+] nonBSJ supported CDS

circRNA 5': CCAU--GUC---UUCCAGACUAUCCAUGUCUUCCAGAA 3'


            |||: |:| |:|||:| ||| :||| ||:|


target  3':UGGUGUCCGGUGAAGGGUUUC-UAGUU-UAGAC-GUUUC 5'

 -14.60 1 RIC-seq
chrX:139866305:139866345:[+] chr15:43444071:43444102:[+] nonBSJ supported CDS

circRNA 5':CUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCC--AGGAA 3'


            ||| |||:|:|| ||| ||||


target  3':AAGU---GGUGUUGAUAUU--------UCCUCACUAAAUCCUA 5'

 -12.70 2 RIC-seq
chrX:139866305:139866353:[+] chr15:43444065:43444102:[+] nonBSJ supported CDS

circRNA 5':CUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCC--AGGAAAUCCGUGU 3'


            ||| |||:|:|| ||| |||| |||


target  3':AAGU---GGUGUUGAUAUU--------UCCUCACUAAAUCCUAAC--CACU 5'

 -13.20 8 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:43444065:43444102:[+] target - chr15:43444078-43444079 A>G BTCA-JP ICGC
chr15:43444071:43444102:[+] target - chr15:43444078-43444079 A>G BTCA-JP ICGC
chrX:139866305:139866345:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866305:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC