Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865878:139865927:[+] chr11:117708476:117708512:[-] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGC 3'


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target  3':ACUACUGUUUCACGAC-GUUUGGAAG----------GGUCCAG--GGUUC 5'

 -19.40 37 RIC-seq
chrX:139866122:139866138:[+] chr11:117707764:117707781:[-] nonBSJ supported 3UTR

circRNA 5':CCAAUGGCCUC-CAG-GUC 3'


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target  3':CGUUACCC-AGUGUCGCGU 5'

 -11.20 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865878:139865927:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC