Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865634:139865664:[+] chr11:110104129:110104156:[-] nonBSJ supported CDS

circRNA 5':AAGGUCUUCCAUCAAAUACAGAUCUUC-CAGC 3'


            |||| ||||: || |||


target  3':CUCCACCUCCCCCCC---GUCUGU-AGUGUCA 5'

 -10.00 26 RIC-seq
chrX:139865724:139865784:[+] chr11:110128575:110128636:[-] nonBSJ supported CDS

circRNA 5':CUAGUUC-UUCCAGAAAAAUCUAGAUCUUC--CAGUCAAUCAGUGUCUUCCAGAA-AGAAAUCCA 3'


            ||||| :|||| |||||||||| ||:|| |||| || ||||| || |||||


target  3':UAUCAACUGAGGUAUGUAAAGAUCUAGAACACGUUAGA-AGUC-CAUAAGGUAGUAUC-UUAGGA 5'

 -43.50 12 RIC-seq
chrX:139866471:139866533:[+] chr11:110100678:110100725:[-] nonBSJ supported Intron

circRNA 5':AAGGUAUG---UCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGU 3'


            ||| ||: ||||||| ||| ||| || |||: :|||||


target  3':AUCCUUAUAAGAGAAGGUA---UCCUA--AGACU-UCGUACACGUGU------------UGGUACC 5'

 -21.80 19 RIC-seq
chrX:139866471:139866540:[+] chr11:110100678:110100734:[-] nonBSJ supported Intron

circRNA 5':AAGGUAUG---UCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGUCUUC-CAG 3'


            ||| ||: ||||||| ||| ||| || |||: :||||| |||


target  3':AUCCUUAUAAGAGAAGGUA---UCCUA--AGACU-UCGUACACGUGU------------UGGUACCAUGUUGUCA 5'

 -22.30 1 RIC-seq
chrX:139866471:139866541:[+] chr11:110100678:110100733:[-] nonBSJ supported Intron

circRNA 5':AAGGUAUG---UCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGUCUUC-CAGA 3'


            ||| ||: ||||||| ||| ||| || |||: :||||| |||


target  3':AUCCUUAUAAGAGAAGGUA---UCCUA--AGACU-UCGUACACGUGU------------UGGUACCAUGUUGUC 5'

 -22.90 1 RIC-seq
chrX:139866471:139866541:[+] chr11:110100678:110100734:[-] nonBSJ supported Intron

circRNA 5':AAGGUAUG---UCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGUCUUC-CAGA 3'


            ||| ||: ||||||| ||| ||| || |||: :||||| |||


target  3':AUCCUUAUAAGAGAAGGUA---UCCUA--AGACU-UCGUACACGUGU------------UGGUACCAUGUUGUCA 5'

 -22.90 18 RIC-seq
chrX:139866475:139866503:[+] chr11:110100666:110100694:[-] nonBSJ supported Intron

circRNA 5':UAUGU-CUUCCAACAAAGGUACG---UCUUCCA 3'


            |||| || ||| ||| ||||||


target  3': UACAUGAC-GUUCA-UCCUUAUAAGAGAAGG 5'

 -12.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:110104129:110104156:[-] target 13185 chr11:110104143-110104144 G>GC Autosomal_recessive_nonsyndromic_hearing_loss_24 ClinVar