Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866061:139866109:[+] chr4:170429433:170429478:[-] nonBSJ supported CDS

circRNA 5':GGGUCUUCCUGAAAAUCUAC-GUCUUCCAAAAAAGCCAU-GUCUU-CCAGAA 3'


            | || ||||| ||| ||||| ||| ||||| |||||


target  3':GCGAGUA--ACUUUAAGACAUCAGAAUAAA----CGGAGUCAGAACGGUCUA 5'

 -26.20 1 RIC-seq
chrX:139866061:139866113:[+] chr4:170429433:170429484:[-] nonBSJ supported CDS

circRNA 5':GGGUCUUCCUGAAAAUCUAC-GUCUUCCAAAAAAGCCAU-GUCUU-CCAGA-AAAUC 3'


            | || ||||| ||| ||||| ||| ||||| ||||| |||:|


target  3':GCGAGUA--ACUUUAAGACAUCAGAAUAAA----CGGAGUCAGAACGGUCUAUUUGGA 5'

 -27.90 29 RIC-seq
chrX:139866064:139866113:[+] chr4:170429434:170429484:[-] nonBSJ supported CDS

circRNA 5':UCUUCCUGAAAAUCUAC-GUCUUCCAAAAAAGCCAU-GUCUU-CCAGA-AAAUC 3'


            ||: ||||| ||| ||||| ||| ||||| ||||| |||:|


target  3':CGAGUAACUUUAAGACAUCAGAAUAAA----CGGAGUCAGAACGGUCUAUUUGGA 5'

 -27.10 4 RIC-seq
chrX:139866064:139866113:[+] chr4:170429435:170429484:[-] nonBSJ supported CDS

circRNA 5':UCUUCCUGAAAAUCUAC-GUCUUCCAAAAAAGCCAU-GUCUU-CCAGA-AAAUC 3'


            ||: ||||| ||| ||||| ||| ||||| ||||| |||:|


target  3': GAGUAACUUUAAGACAUCAGAAUAAA----CGGAGUCAGAACGGUCUAUUUGGA 5'

 -26.70 1 RIC-seq
chrX:139866069:139866113:[+] chr4:170429439:170429484:[-] nonBSJ supported CDS

circRNA 5':CUGAAAAUCUAC-GUCUUCCAAAAAAGCCAU-GUCUU-CCAGA-AAAUC 3'


            ||||| ||| ||||| ||| ||||| ||||| |||:|


target  3':AACUUUAAGACAUCAGAAUAAA----CGGAGUCAGAACGGUCUAUUUGGA 5'

 -26.30 2 RIC-seq
chrX:139866075:139866109:[+] chr4:170429445:170429478:[-] nonBSJ supported CDS

circRNA 5':AUCUAC-GUCUUCCAAAAAAGCCAU-GUCUU-CCAGAA 3'


            ||| ||||| ||| ||||| |||||


target  3':AAGACAUCAGAAUAAA----CGGAGUCAGAACGGUCUA 5'

 -20.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:170429433:170429478:[-] target 266048 chr4:170429443-170429444 A>T Amyotrophic_lateral_sclerosis,_susceptibility_to,_24|Motor_neuron_disease|Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly|not_provided ClinVar
chr4:170429433:170429478:[-] target 446670 chr4:170429461-170429462 GCC>G Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly ClinVar
chr4:170429433:170429484:[-] target 266048 chr4:170429443-170429444 A>T Amyotrophic_lateral_sclerosis,_susceptibility_to,_24|Motor_neuron_disease|Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly|not_provided ClinVar
chr4:170429433:170429484:[-] target 446670 chr4:170429461-170429462 GCC>G Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly ClinVar
chr4:170429434:170429484:[-] target 266048 chr4:170429443-170429444 A>T Amyotrophic_lateral_sclerosis,_susceptibility_to,_24|Motor_neuron_disease|Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly|not_provided ClinVar
chr4:170429434:170429484:[-] target 446670 chr4:170429461-170429462 GCC>G Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly ClinVar
chr4:170429435:170429484:[-] target 266048 chr4:170429443-170429444 A>T Amyotrophic_lateral_sclerosis,_susceptibility_to,_24|Motor_neuron_disease|Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly|not_provided ClinVar
chr4:170429435:170429484:[-] target 446670 chr4:170429461-170429462 GCC>G Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly ClinVar
chr4:170429439:170429484:[-] target 266048 chr4:170429443-170429444 A>T Amyotrophic_lateral_sclerosis,_susceptibility_to,_24|Motor_neuron_disease|Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly|not_provided ClinVar
chr4:170429439:170429484:[-] target 446670 chr4:170429461-170429462 GCC>G Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly ClinVar
chr4:170429445:170429478:[-] target 446670 chr4:170429461-170429462 GCC>G Short-rib_thoracic_dysplasia_6_with_or_without_polydactyly ClinVar