Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866605:139866631:[+] chr6:30680181:30680203:[-] nonBSJ supported CDS

circRNA 5':UCUUCCUAUAUCUCCAGGUC--UUCCAGC 3'


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target  3': GAAG-----AGAGGUCCACCUAGGGUCC 5'

 -24.10 1 RIC-seq
chrX:139866614:139866655:[+] chr6:30680184:30680217:[-] nonBSJ supported CDS

circRNA 5':AUCUCCAGGUC--UUCCAGCAUCUCCAGGGCUUCCAGCAUCUGC 3'


            ||||||||| |:|||| |:|||: |||||


target  3':GAGAGGUCCACCUAGGGUCCA------CUCGAGAA---UAGAC 5'

 -30.40 4 RIC-seq
chrX:139866620:139866662:[+] chr6:30680179:30680216:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGC--UUCCAGCAUCUGCUC--GUCUU 3'


            || |||| |||||||| |:|||| |||| :|||


target  3': CC-GAAG-----AGAGGUCCACCUAGGGUCCACU-CGAGAAUAGA 5'

 -32.70 5 RIC-seq
chrX:139866620:139866662:[+] chr6:30680179:30680217:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGC--UUCCAGCAUCUGCUC--GUCUU 3'


            || |||| |||||||| |:|||| |||| :|||


target  3': CC-GAAG-----AGAGGUCCACCUAGGGUCCACU-CGAGAAUAGAC 5'

 -33.20 32 RIC-seq