Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866614:139866650:[+] chr6:10825265:10825304:[+] nonBSJ supported Intron

circRNA 5':AUCUCCAG--GUCUUCCA--GCAUCUCCAGGGCUUCCAGCA 3'


            ||:|||| |||:|| :||||:|| :| || :|


target  3':AAGGGGUCUUCAGGAGUUCCUGUAGGGGAA-UGUAGAAUGA 5'

 -31.40 2 RIC-seq
chrX:139866614:139866667:[+] chr6:10825231:10825304:[+] nonBSJ supported Intron

circRNA 5':AUCUCCAG--GUCUUCCA--GCAUCUCCAG----------GGCUUCCAG-----CAUCUG--CUCGUCUUCCAAC 3'


            ||:|||| |||:|| :||||:|| |||| ||: || ||| ||||||||


target  3':AAGGGGUCUUCAGGAGUUCCUGUAGGGGAAUGUAGAAUGACCGAUCAUAACCCAGUGCACCAGAG-AGAAGGUUU 5'

 -44.20 1 RIC-seq