Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866243:139866263:[+] chr9:35725241:35725272:[-] nonBSJ supported CDS

circRNA 5':CGUCU--------UCCAACAA--AGCCAUGU 3'


            |||: :||| | ||||||:|


target  3':UCAGGUUUCGAAAGGGUCGGAGGUCGGUAUAU 5'

 -16.00 1 RIC-seq
chrX:139866364:139866390:[+] chr9:35712054:35712075:[-] nonBSJ supported CDS

circRNA 5':AUCCACGUCUUCCAACAAAGCCAUGUC 3'


            |||||:|| |||| ||


target  3': AGGUGUAGCGCGAC----CGGUCCAU 5'

 -15.30 2 RIC-seq
chrX:139866369:139866389:[+] chr9:35725241:35725272:[-] nonBSJ supported CDS

circRNA 5':CGUCU--------UCCAACAA--AGCCAUGU 3'


            |||: :||| | ||||||:|


target  3':UCAGGUUUCGAAAGGGUCGGAGGUCGGUAUAU 5'

 -16.00 1 RIC-seq