Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866765:139866806:[+] chr9:35718828:35718880:[-] nonBSJ supported CDS

circRNA 5': CAACGUCUCCAG--UG-UGCUGAU-CUUCUGACAU-UCAGGUCU----UCC 3'


            || ||:|||: || ||| ||:|: || :| ||:|: |||


target  3':AGUGAAAGGGGUUAAACAACGUUGUCGAGGGGUGACCGGACCGGGUGCAAGGG 5'

 -26.80 2 RIC-seq
chrX:139866765:139866807:[+] chr9:35718828:35718880:[-] nonBSJ supported CDS

circRNA 5': CAACGUCUCCAG--UG-UGCUGAU-CUUCUGACAU-UCAGGUCU----UCCA 3'


            || ||:|||: || ||| ||:|: || :| ||:|: |||


target  3':AGUGAAAGGGGUUAAACAACGUUGUCGAGGGGUGACCGGACCGGGUGCAAGGG 5'

 -28.20 27 RIC-seq
chrX:139866769:139866807:[+] chr9:35718833:35718880:[-] nonBSJ supported CDS

circRNA 5':GUCUCCAG--UG-UGCUGAU-CUUCUGACAU-UCAGGUCU----UCCA 3'


            ||:|||: || ||| ||:|: || :| ||:|: |||


target  3':AAGGGGUUAAACAACGUUGUCGAGGGGUGACCGGACCGGGUGCAAGGG 5'

 -27.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866765:139866806:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866765:139866807:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866769:139866807:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC