Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865864:139865939:[+] chr9:127623756:127623818:[-] nonBSJ supported CDS

circRNA 5':CUUCCACCAAAUCCAGGUCUUCCAGUCAA-UC--CACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCU 3'


            ||||||| |||||| |||||: || || ||:||| |||||| || || || ||


target  3':CGAGGUGGAA---GUCCAGCAGGUCGACAAAGUCGUCGAGGAGGAAGA----------AGAAGGGCGCUUC--UAGAG 5'

 -46.30 1 RIC-seq
chrX:139865864:139865939:[+] chr9:127623756:127623819:[-] nonBSJ supported CDS

circRNA 5':CUUCCACCAAAUCCAGGUCUUCCAGUCAA-UC--CACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCU 3'


            ||||||| |||||| |||||: || || ||:||| |||||| || || || ||


target  3':CGAGGUGGAA---GUCCAGCAGGUCGACAAAGUCGUCGAGGAGGAAGA----------AGAAGGGCGCUUC--UAGAGC 5'

 -46.50 11 RIC-seq
chrX:139865865:139865939:[+] chr9:127623756:127623819:[-] nonBSJ supported CDS

circRNA 5': UUCCACCAAAUCCAGGUCUUCCAGUCAA-UC--CACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCU 3'


            ||||||| |||||| |||||: || || ||:||| |||||| || || || ||


target  3':CGAGGUGGAA---GUCCAGCAGGUCGACAAAGUCGUCGAGGAGGAAGA----------AGAAGGGCGCUUC--UAGAGC 5'

 -46.30 1 RIC-seq
chrX:139865866:139865939:[+] chr9:127623757:127623819:[-] nonBSJ supported CDS

circRNA 5': UCCACCAAAUCCAGGUCUUCCAGUCAA-UC--CACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCU 3'


            |||||| |||||| |||||: || || ||:||| |||||| || || || ||


target  3':GAGGUGGAA---GUCCAGCAGGUCGACAAAGUCGUCGAGGAGGAAGA----------AGAAGGGCGCUUC--UAGAGC 5'

 -46.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865864:139865939:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865865:139865939:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865866:139865939:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC