Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866354:139866368:[+] chr9:101052588:101052602:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCAGCAAAUCCA 3'


            |:||||| |||


target  3':UAGGGUCGCGGAGGA 5'

 -15.40 1 RIC-seq
chrX:139866403:139866424:[+] chr9:101052585:101052606:[-] nonBSJ supported 3UTR

circRNA 5':AAUGUCUUCCAGCCUACUUGUG 3'


            ||:||:: |||| |||||


target  3':CUAUAGGGUCGCGGAGGAACAA 5'

 -18.40 65 RIC-seq
chrX:139866413:139866424:[+] chr9:101052595:101052606:[-] nonBSJ supported 3UTR

circRNA 5':AGCCUACUUGUG 3'


            |||| |||||


target  3':GCGGAGGAACAA 5'

 -12.80 1 RIC-seq
chrX:139865623:139865642:[+] chr9:101147925:101147946:[-] nonBSJ supported CDS

circRNA 5':CCAAUAA-UUUC-AAGGUCUUC 3'


            ||| |||| ||||||||


target  3':CGUUUCACAAAGUUUCCAGAAA 5'

 -12.70 29 RIC-seq
chrX:139865629:139865656:[+] chr9:101147932:101147976:[-] nonBSJ supported CDS

circRNA 5':AUUUC-AAGGUCU----------------UCCAUCAAAUACAGAU 3'


            |||| ||||||| |||||||| ||:|


target  3':CAAAGUUUCCAGAAAAGUCUCUGUUUCCUAGGUAGUUCCGGUUUC 5'

 -22.00 1 RIC-seq
chrX:139865629:139865662:[+] chr9:101147932:101147965:[-] nonBSJ supported CDS

circRNA 5':AUUUC-AAGGUCUUCCAUCAAAUACAGAUCUUCCA 3'


            |||| |||||||| ||| |||:| ||||


target  3':CAAAGUUUCCAGAAA--AGUCUCUGUUUCCUAGGUA 5'

 -20.80 16 RIC-seq
chrX:139865768:139865789:[+] chr9:101133827:101133848:[-] nonBSJ supported CDS

circRNA 5':UUCCAGAAAGA-AAUCCAGGUCU 3'


            |||| || ||||||||||


target  3':CGGGUGCCACUCUUAGGUCCAG 5'

 -21.50 1 RIC-seq
chrX:139865768:139865791:[+] chr9:101133827:101133851:[-] nonBSJ supported CDS

circRNA 5':UUCCAGAAAGA-AAUCCAGGUCUUC 3'


            |||| || ||||||||||:|


target  3':CGGGUGCCACUCUUAGGUCCAGGAC 5'

 -23.10 24 RIC-seq
chrX:139866616:139866655:[+] chr9:101133827:101133852:[-] nonBSJ supported CDS

circRNA 5':CUCCA-GGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGC 3'


            |||| ||| |:| ||||| :|||


target  3':CGGGUGCCA---------------CUCUUAGGUCCAGGACU 5'

 -17.30 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:101147925:101147946:[-] target - chr9:101147942-101147943 T>C LICA-CN ICGC
chr9:101147932:101147965:[-] target - chr9:101147942-101147943 T>C LICA-CN ICGC
chr9:101147932:101147976:[-] target - chr9:101147942-101147943 T>C LICA-CN ICGC