Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865891:139865920:[+] chr9:132643467:132643496:[+] nonBSJ supported 3UTR

circRNA 5':AAUCCA-----CAUCUUCCGGAAAAAAUCCA-GGUC 3'


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target  3': UAGGGACAAAGUAGUAGGCCA-----AGGGACCAC 5'

 -18.00 1 RIC-seq
chrX:139865891:139865928:[+] chr9:132643456:132643496:[+] nonBSJ supported 3UTR

circRNA 5':AAUCCA-----CAUCUUCCGGAAAAAAUCCA-GGUCUU--C-CAGCC 3'


            |||| |||| ||||| ||| ||| | ||||


target  3': UAGGGACAAAGUAGUAGGCCA-----AGGGACCACCCCCGAGUCGU 5'

 -21.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865891:139865920:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865891:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC