Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866606:139866623:[+] chr9:123205931:123205949:[-] nonBSJ supported CDS

circRNA 5':CUUCCUAUA-UCUCCAGGU 3'


            ||||| |||||||:


target  3':AAAGGAACAGAGAGGUCUG 5'

 -18.00 1 RIC-seq
chrX:139866606:139866662:[+] chr9:123205931:123205983:[-] nonBSJ supported CDS

circRNA 5':CUUCCUAUA-UCUCCAGGUCUUCCAGCAUCUCCAGGGC----UUCCAGCAUCUGCUCGUCUU 3'


            ||||| |||||||: ||| || |||| ||||||| :||


target  3':AAAGGAACAGAGAGGUCU-----GUCUUCUACA-CCAAAAUUAAGGAA--AGACGAGAGGA 5'

 -33.60 23 RIC-seq
chrX:139866606:139866662:[+] chr9:123205932:123205983:[-] nonBSJ supported CDS

circRNA 5':CUUCCUAUA-UCUCCAGGUCUUCCAGCAUCUCCAGGGC----UUCCAGCAUCUGCUCGUCUU 3'


            ||||| |||||||: ||| || |||| ||||||| :||


target  3': AAGGAACAGAGAGGUCU-----GUCUUCUACA-CCAAAAUUAAGGAA--AGACGAGAGGA 5'

 -32.70 1 RIC-seq
chrX:139866606:139866665:[+] chr9:123205931:123205982:[-] nonBSJ supported CDS

circRNA 5':CUUCCUAUA-UCUCCAGGUCUUCCAGCAUCUCCAGGGC----UUCCAGCAUCUGCUCGUCUUCCA 3'


            ||||| |||||||: ||| || |||| ||||||| |||


target  3':AAAGGAACAGAGAGGUCU-----GUCUUCUACA-CCAAAAUUAAGGAA--AGACGAG----AGG 5'

 -33.50 4 RIC-seq
chrX:139866607:139866658:[+] chr9:123205933:123205980:[-] nonBSJ supported CDS

circRNA 5':UUCCUAUA-UCUCCAGGUCUUCCAGCAUCUCCAGGGC----UUCCAGCAUCUGCUCG 3'


            |||| |||||||: ||| || |||| |||||||


target  3': AGGAACAGAGAGGUCU-----GUCUUCUACA-CCAAAAUUAAGGAA--AGACGAGA 5'

 -29.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:123205931:123205949:[-] target 209966 chr9:123205948-123205949 AC>A Inborn_genetic_diseases|not_provided|Microcephaly_3,_primary,_autosomal_recessive ClinVar
chr9:123205931:123205982:[-] target 209966 chr9:123205948-123205949 AC>A Inborn_genetic_diseases|not_provided|Microcephaly_3,_primary,_autosomal_recessive ClinVar
chr9:123205931:123205983:[-] target 209966 chr9:123205948-123205949 AC>A Inborn_genetic_diseases|not_provided|Microcephaly_3,_primary,_autosomal_recessive ClinVar
chr9:123205932:123205983:[-] target 209966 chr9:123205948-123205949 AC>A Inborn_genetic_diseases|not_provided|Microcephaly_3,_primary,_autosomal_recessive ClinVar
chr9:123205933:123205980:[-] target 209966 chr9:123205948-123205949 AC>A Inborn_genetic_diseases|not_provided|Microcephaly_3,_primary,_autosomal_recessive ClinVar