Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865454:139865480:[+] chr9:130413912:130413935:[+] nonBSJ supported CDS

circRNA 5':ACAUCUUCCAGACAAUCCAUGUCUUCC 3'


            ||:|||||| :|| |||||


target  3':AGUGGAAGGUAAGG-GGGA--AGAAGA 5'

 -21.00 16 RIC-seq
chrX:139865470:139865497:[+] chr9:130413912:130413935:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCGGACAAUCCAUGUCUUC 3'


            ||: |||||: :|| |||||


target  3':AGUG--GAAGGUAAGG-GGGA--AGAAGA 5'

 -15.10 1 RIC-seq
chrX:139865822:139865844:[+] chr9:130442438:130442456:[+] nonBSJ supported CDS

circRNA 5':CAGGUCU-UCCAGUCAGUCAGUGU 3'


            |:|| ||| |||:| ||||


target  3': UUCAAACAGG--AGUUA-UCAC 5'

 -10.00 8 RIC-seq
chrX:139865894:139865920:[+] chr9:130444773:130444790:[+] nonBSJ supported CDS

circRNA 5':CCACAUCUUCCGGAAAAAAUCCAGGUC 3'


            | |||||: || ||||:


target  3':CGCGUAGAG---------UAAGUCCGA 5'

 -10.30 9 RIC-seq
chrX:139865896:139865920:[+] chr9:130444773:130444788:[+] nonBSJ supported CDS

circRNA 5':ACAUCUUCCGGAAAAAAUCCAGGUC 3'


            |||||: || ||||:


target  3':CGUAGAG---------UAAGUCCGA 5'

 -10.30 1 RIC-seq
chrX:139865940:139865981:[+] chr9:130444775:130444813:[+] nonBSJ supported CDS

circRNA 5':UCCUGAAGAUCCACGUCUUC-CAGAAAAUCCAUGUCUUCCAGA 3'


            |||| || ||| | ||| ||| || |||


target  3':CGGACCCAGUGGAGCAUCCGCGUCGC----GUAGAGUAAGUCC 5'

 -16.70 13 RIC-seq
chrX:139866406:139866425:[+] chr9:130425531:130425551:[+] nonBSJ supported CDS

circRNA 5':GUCUUCC----AGCCUACUUGUGU 3'


            ||||| ||||| ||||


target  3':AAGAAGUAGACUCGGA---ACACC 5'

 -13.00 20 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:130413912:130413935:[+] target 2822576 chr9:130413918-130413919 A>AGG Early_infantile_epileptic_encephalopathy_with_suppression_bursts ClinVar
chr9:130413912:130413935:[+] target 561120 chr9:130413923-130413924 G>T Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Developmental_and_epileptic_encephalopathy,_4 ClinVar
chr9:130413912:130413935:[+] target 2822114 chr9:130413926-130413927 T>TG Early_infantile_epileptic_encephalopathy_with_suppression_bursts ClinVar
chr9:130413912:130413935:[+] target 436894 chr9:130413933-130413934 T>C Developmental_and_epileptic_encephalopathy,_4 ClinVar
chr9:130442438:130442456:[+] target 984902 chr9:130442444-130442445 TGAG>T Infantile_epilepsy_syndrome ClinVar
chr9:130442438:130442456:[+] target 2505544 chr9:130442452-130442453 AACTTGAC>A Developmental_and_epileptic_encephalopathy,_4 ClinVar
chr9:130444773:130444788:[+] target 1071661 chr9:130444778-130444779 G>GC Early_infantile_epileptic_encephalopathy_with_suppression_bursts ClinVar
chr9:130444773:130444790:[+] target 1071661 chr9:130444778-130444779 G>GC Early_infantile_epileptic_encephalopathy_with_suppression_bursts ClinVar
chr9:130444773:130444790:[+] target 207439 chr9:130444788-130444789 C>A Developmental_and_epileptic_encephalopathy,_4|not_provided ClinVar
chr9:130444773:130444790:[+] target 207440 chr9:130444788-130444789 C>T Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Developmental_and_epileptic_encephalopathy,_4|Infantile_epilepsy_syndrome|Developmental_disorder|See_cases|not_provided ClinVar
chr9:130444773:130444790:[+] target 566474 chr9:130444789-130444790 G>A Developmental_and_epileptic_encephalopathy,_4|Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Inborn_genetic_diseases ClinVar
chr9:130444775:130444813:[+] target 1071661 chr9:130444778-130444779 G>GC Early_infantile_epileptic_encephalopathy_with_suppression_bursts ClinVar
chr9:130444775:130444813:[+] target 207439 chr9:130444788-130444789 C>A Developmental_and_epileptic_encephalopathy,_4|not_provided ClinVar
chr9:130444775:130444813:[+] target 207440 chr9:130444788-130444789 C>T Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Developmental_and_epileptic_encephalopathy,_4|Infantile_epilepsy_syndrome|Developmental_disorder|See_cases|not_provided ClinVar
chr9:130444775:130444813:[+] target 566474 chr9:130444789-130444790 G>A Developmental_and_epileptic_encephalopathy,_4|Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Inborn_genetic_diseases ClinVar
chr9:130444775:130444813:[+] target 984865 chr9:130444791-130444792 T>C Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Infantile_epilepsy_syndrome ClinVar
chr9:130444775:130444813:[+] target 1212923 chr9:130444792-130444793 G>A Seizure|not_provided|Developmental_and_epileptic_encephalopathy,_4 ClinVar
chr9:130444775:130444813:[+] target 944674 chr9:130444793-130444794 C>A Developmental_and_epileptic_encephalopathy,_4|Early_infantile_epileptic_encephalopathy_with_suppression_bursts ClinVar
chr9:130444775:130444813:[+] target 1803078 chr9:130444794-130444795 G>C Developmental_and_epileptic_encephalopathy,_4 ClinVar
chr9:130444775:130444813:[+] target 2584351 chr9:130444798-130444799 A>C Developmental_and_epileptic_encephalopathy,_4 ClinVar
chr9:130444775:130444813:[+] target 2671713 chr9:130444799-130444800 C>G Developmental_and_epileptic_encephalopathy,_4 ClinVar
chr9:130444775:130444813:[+] target 3720906 chr9:130444806-130444807 AC>A Early_infantile_epileptic_encephalopathy_with_suppression_bursts ClinVar
chr9:130444775:130444813:[+] target 1691863 chr9:130444809-130444810 C>AACGGAAAGTGGGAGGTGGGAGG Developmental_and_epileptic_encephalopathy,_4 ClinVar
chr9:130444775:130444813:[+] target 207443 chr9:130444809-130444810 C>T Early_infantile_epileptic_encephalopathy_with_suppression_bursts|not_provided ClinVar
chrX:139865894:139865920:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865896:139865920:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC