Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865527:139865555:[+] chr9:129983367:129983401:[+] nonBSJ supported 3UTR

circRNA 5':AGUCUUCCAGCAAA---UCCAG---UCUUCCAGCA 3'


            |||||||||| ||||| |||||| ||


target  3':ACAGAAGGUCGAAAUCGAGGUCCUGAGAAGGCCGC 5'

 -36.10 21 RIC-seq
chrX:139866243:139866277:[+] chr9:129983370:129983401:[+] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACAA-AGCCAUGUCUUCCA-GACUA-UCC 3'


            |||||||| ||| |||| |||| |||


target  3':ACAGAAGGUCGAAAUCG-------AGGUCCUGAGAAGGC 5'

 -25.00 22 RIC-seq
chrX:139866410:139866440:[+] chr9:129815192:129815215:[+] nonBSJ supported CDS

circRNA 5':UCCAGCCUACUUGUGUCUUCCAACAAAGGUA 3'


            |||| |||| || |||:|


target  3': GGUCCAAAA---ACAGUCGGAC--UUCUA 5'

 -10.90 21 RIC-seq
chrX:139866411:139866418:[+] chr9:129815197:129815204:[+] nonBSJ supported CDS

circRNA 5':CCAGCCUA 3'


            ||||||


target  3':AGUCGGAC 5'

 -10.70 1 RIC-seq
chrX:139866453:139866476:[+] chr9:129815192:129815214:[+] nonBSJ supported CDS

circRNA 5':AAGGUAC--GUCUUCCAACAAAGGUA 3'


            |||| ||| || |||:|


target  3':GUCCAAAAACAGUCGGAC--UUCUA 5'

 -10.00 1 RIC-seq