Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865831:139865884:[+] chr9:114135487:114135518:[-] nonBSJ supported 5UTR

circRNA 5':CAGUCAGUCAGUGU--CUUCCAGAAAAAUCUACGUCUUCCACCAAAUCC----AGGUCUU 3'


            ||| ||||||: || |||| ||||||


target  3':CUCAAAAAGUCACGACGA---------------------------UAGGGCACUCCAGA 5'

 -17.30 12 RIC-seq
chrX:139865970:139865992:[+] chr9:114154076:114154099:[-] nonBSJ supported 5UTR

circRNA 5':AUGUCU-UCCAGAAAAUCCAUGUC 3'


            ||||| |||||||| |||||


target  3':GACAGAGAGGUCUUUGAAGUACAA 5'

 -22.00 11 RIC-seq
chrX:139866315:139866336:[+] chr9:114133006:114133025:[-] nonBSJ supported CDS

circRNA 5':UAGCUUCCGAAAAAUCCAGGUC 3'


            |||| |: |: ||||:


target  3':UUCGACAGUGG--UGUGUCCGU 5'

 -10.50 1 RIC-seq
chrX:139866380:139866399:[+] chr9:114133005:114133022:[-] nonBSJ supported CDS

circRNA 5':AAAGCCAUGUCUUCCAU-CAA 3'


            |||| |||| |||: ||


target  3':GUUCG--ACAGU-GGUGUGUC 5'

 -11.90 1 RIC-seq
chrX:139866380:139866407:[+] chr9:114133005:114133028:[-] nonBSJ supported CDS

circRNA 5':AAAGCCAUGUCUUCCAUCAAAUUAAUGU 3'


            |||| |||| |||: :||||


target  3':GUUCG--ACAGU-GGUGUGUCCGUUAC 5'

 -13.40 2 RIC-seq
chrX:139866380:139866407:[+] chr9:114133005:114133029:[-] nonBSJ supported CDS

circRNA 5':AAAGCCAUGUCUUCCAUCAAAUUAAUGU 3'


            |||| |||| |||: :||||


target  3':GUUCG--ACAGU-GGUGUGUCCGUUACC 5'

 -13.80 14 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866315:139866336:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC