Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865338:139865362:[+] chr2:158175202:158175234:[-] nonBSJ supported 3UTR

circRNA 5':AGGGUUUCC--GAUG---GCAC---CUGUGUCA 3'


            ||| |||| ||| |||||:|


target  3':CCCCUCUCUCUCUACCAUCGUUUAAGACACGGA 5'

 -17.60 14 RIC-seq
chrX:139866413:139866430:[+] chr2:158177220:158177237:[-] nonBSJ supported 3UTR

circRNA 5':AGCCUACUUGUGUCUUCC 3'


            || :||| |||


target  3':CCGAUAUCUUACAAAAGA 5'

 -5.60 24 RIC-seq
chrX:139866414:139866430:[+] chr2:158177220:158177237:[-] nonBSJ supported 3UTR

circRNA 5': GCCUACUUGUGUCUUCC 3'


            || :||| |||


target  3':CCGAUAUCUUACAAAAGA 5'

 -5.40 2 RIC-seq
chrX:139866452:139866484:[+] chr2:158177213:158177237:[-] nonBSJ supported 3UTR

circRNA 5':AAAGGUACGUCUUCCAACAAAGGUAUGUCUUCC 3'


            |||| | || ||: |||| |||


target  3':CUUCCUCCC-GAUA------UCU-UACAAAAGA 5'

 -5.30 1 RIC-seq