Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866285:139866327:[+] chr2:166245358:166245394:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAA 3'


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target  3':AGUAGC-UAGGGUU-GAAGGGAGAAUU-GUAUCC---GUUUUA 5'

 -23.70 11 RIC-seq
chrX:139866291:139866327:[+] chr2:166245358:166245389:[+] nonBSJ supported CDS

circRNA 5':AAUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAA 3'


            ||||: |||||||| ||||| |:|||


target  3':CUAGGGUU-GAAGGGAGAAUU-GUAUCC---GUUUUA 5'

 -23.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:166245358:166245389:[+] target 978921 chr2:166245362-166245363 TGC>GG Intellectual_disability ClinVar
chr2:166245358:166245394:[+] target 978921 chr2:166245362-166245363 TGC>GG Intellectual_disability ClinVar
chrX:139866285:139866327:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866291:139866327:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC